Publications

[ORCID Profile]   [Google Scholar Citations]   [ResearchGate Profile]

  • Francesca Giordano, Louise Aigrain, Michael A. Quail, Paul Coupland, James K. Bonfield, Robert M. Davies, German Tischler, David K. Jackson, Thomas M. Keane, Jing Li, Jia-Xing Yue, Gianni Liti, Richard Durbin, Zemin Nin. (2017) De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms. Scientific Reports, 7:3935. (doi:10.1038/s41598-017-03996-z) [PDF]
  • Jia-Xing Yue, Jing Li, Louise Aigrain, Johan Hallin, Karl Persson, Karen Oliver, Anders Bergström, Paul Coupland, Jonas Warringer, Marco Cosentino Lagomarsino, Gilles Fischer, Richard Durbin, Gianni Liti. (2017) Contrasting genome dynamics between domesticated and wild yeasts. Nature Genetics, 49:913-924. (doi:10.1038/ng.3847) [PDF]
  • Chun-Min Shan, Jiyong Wang, Ke Xu, Huijie Chen, Jia-Xing Yue, Stuart Andrews, James J. Moresco, John R. Yates III, Peter L. Nagy, Liang Tong, Songtao Jia.  (2016) A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading. eLife5:e17903. (doi:10.7554/eLife.17903) [PDF]
  • Jia-Xing Yue, Iryna Kozmikova, Hiroki Ono, Carlos W. Nossa, Zbynek Kozmik, Nicholas H. Putnam, Jr-Kai Yu, Linda Z. Holland. (2016) Conserved non-coding elements in the most distant genera of cephalochordates: the Goldilocks principle. Genome Biology and Evolution8(8):2387-2405. (doi:10.1093/gbe/evw158) [PDF]
  • Jia-Xing Yue, Nicholas D. Holland, Linda Z. Holland, Dimitri D. Deheyn. (2016) The evolution of genes encoding for green fluorescent proteins: insights from cephalochordates (amphioxus). Scientific Reports, 6:28350. (co-corresponding author) (doi:10.1038/srep28350) [PDF]
  • Kristoffer Krogerus, Mikko Arvas, Matteo De Chiara, Frederico Magalhães, Laura Mattinen, Merja Oja, Virve Vidgren, Jia-Xing Yue, Gianni Liti, Brian Gibson. (2016) Ploidy influences the functional attributes of de novo lager yeast hybrids. Applied Microbiology and Biotechnology, 100:7203. (doi:10.1007/s00253-016-7588-3) [PDF]
  • Oleg Simakov, Takeshi Kawashima, Ferdinand Marletaz, Jerry Jenkins, Ryo Koyanagi, Therese Mitros, Kanako Hisata, Jessen Bredeson, Eiichi Shoguchi, Fuki Gyoja, Jia-Xing Yue, … (42 others) …, Nori Satoh, Daniel Rokhsar, John Gerhart. (2015) Two hemichordate genomes illuminate the ancestry and diversification of deuterostomes. Nature, 527:459-465. (doi:10.1038/nature16150) [PDF]
  • Roser Buscà, Richard Christen, Matthew Lovern, Alexander M. Clifford, Jia-Xing Yue, Greg G. Goss, Jacques Pouysségur, Philippe Lenormand. (2015) ERK1 and ERK2 present functional redundancy in tetrapods despite higher evolution rate of ERK1. BMC Evolutionary Biology, 15(1):179. (doi:10.1186/s12862-015-0450-x) [PDF]
  • Jia-Xing Yue, Kun-Lung Li, Jr-Kai Yu. (2015) Discovery of germline-related genes in Cephalochordate amphioxus: A genome wide survey using genome annotation and transcriptome data. Marine Genomics, 24:147-157.(doi:10.1016/j.margen.2015.03.010) [PDF]
  • Jia-Xing Yue, Jr-Kai Yu, Nicholas H. Putnam, Linda Z. Holland. (2014) The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution. Genome Biology and Evolution, 6(10):2681-2696. (doi:10.1093/gbe/evu212) [PDF]
  • Carlos W. Nossa, Paul Havlak, Jia-Xing Yue, Jie Lv, Kimberly Y. Vincent, H. Jane Brockmann, Nicholas H. Putnam. (2014) Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication. GigaScience, 3:9. (doi:10.1186/2047-217X-3-9) [PDF]
  • Jia-Xing Yue, Blake C. Meyers, Dacheng Tian, Sihai Yang. (2012) Tracing the origin and evolutionary history of plant NBS-LRR genes. New Phytologist, 193:1049–1063. (doi:10.1111/j.1469-8137.2011.04006.x) [PDF]
  • Jia-Xing Yue, Jinpeng Li, Dan Wang, Hitoshi Araki, Dacheng Tian, Sihai Yang. (2010) Genome-wide investigation reveals high evolutionary rates in annual model plants. BMC Plant Biology, 10:242. (doi:10.1186/1471-2229-10-242) [PDF]
  • Sihai Yang, Xiaohui Zhang, Jia-Xing Yue, Dacheng Tian, Jian-Qun Chen. (2008) Recent duplication dominates the expansion of the NBS-encoding genes in two woody species. Molecular Genetics and Genomics, 280:187-198. (doi:10.1007/s00438-008-0355-0) [PDF]
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